AMP Phase II: Rheumatoid Arthritis

2023-10-26

Gene expression in hundreds of thousands of cells from synovial biopsies and arthroplasties. Data from single-cell RNA-seq, bulk RNA-seq, and mass cytometry experiments by the AMP RA/SLE Network.

doi: 10.1038/s41586-023-06708-y

TBRU: Memory T cells from a tuberculosis progression cohort

2021-11-24

Gene and protein expression in 500k cells from 259 individuals. Single-cell CITE-seq data from the Tuberculosis Research Units Network (TBRU-N).

Nathan A, et al. Multimodally profiling memory T cells from a tuberculosis cohort identifies cell state associations with demographics, environment and disease. Nature Immunology 2020. doi:10.1038/s41590-021-00933-1

doi: 10.1038/s41590-021-00933-1

Response to TNF and IL-17A

2020-03-10

Gene expression response to cytokines TNF and IL-17A in time series, dose response, and gene silencing experiments.

doi: 10.1073/pnas.1912702117

AMP Phase I: Systemic Lupus Erythematosus

2019-12-17

Gene expression in 3k cells from kidney biopsies and urine samples. Data from single-cell RNA-seq and bulk RNA-seq experiments by the AMP RA/SLE Network.

doi: 10.1038/s41590-019-0398-x

AMP Phase I: Rheumatoid Arthritis

2019-11-06

Gene expression in 5k cells from synovial biopsies and arthroplasties. Data from single-cell RNA-seq, bulk RNA-seq, and mass cytometry experiments by the AMP RA/SLE Network.

doi: 10.1038/s41590-019-0378-1

Innate T Cell Gradient

2019-02-08

Gene expression along a gradient of T cell innateness in single-cell RNA-seq and bulk RNA-seq data.

doi: 10.1038/s41467-019-08604-4